Publications
Publications acknowledging the MaCuMBA project:
Insights into the Physiology and Ecology of the Brackish-Water-Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis
Bjoern Voß, Henk Bolhuis, David P. Fewer, Matthias Kopf, Fred Moeke, Fabian Haas,Rehab El-Shehawy, Paul Hayes, Birgitta Bergman, Kaarina Sivonen, Elke Dittmann, Dave J. Scanlan, Martin Hagemann, Lucas J. Stal, Wolfgang R. Hess
PLoS One, 2013
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060224
Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria
Rohit Ghai, Carolina Megumi Mizuno, Antonio Picazo, Antonio Camacho & Francisco Rodriguez-Valera
Scientific Reports, 2013
http://www.nature.com/srep/2013/130820/srep02471/full/srep02471.html
Complete Genome Sequence of the Copiotrophic Marine Bacterium Alteromonas macleodii Strain ATCC 27126T
Aitor Gonzaga, Mario López-Pérez, Ana-Belen Martin-Cuadrado, Rohit Ghai and Francisco Rodriguez-Valera
Journal of Bacteriology, 2012
http://jb.asm.org/content/194/24/6998
Polyclonality of Concurrent Natural Populations of Alteromonas macleodii
Aitor Gonzaga, Ana-Belen Martin-Cuadrado, Mario López-Pérez, Carolina Megumi Mizuno, Inmaculada García-Heredia, Nikole E. Kimes, Purificación Lopez-García, David Moreira, David Ussery, Mila Zaballos, Rohit Ghai and Francisco Rodriguez-Valera
Genome Biology and Evolution, 2012
http://gbe.oxfordjournals.org/content/4/12/1360
Expanding the Marine Virosphere Using Metagenomics
Carolina Megumi Mizuno, Francisco Rodriguez-Valera, Nikole E. Kimes, Rohit Ghai
PLoS Genetics, 2013
http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003987
Genomic Diversity of “Deep Ecotype” Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames
Mario López-Pérez, Aitor Gonzaga and Francisco Rodriguez-Valera
Genome Biology and Evolution, 2013
http://gbe.oxfordjournals.org/content/5/6/1220
Evidence for metaviromic islands in marine phages
Carolina Megumi Mizuno, Rohit Ghai and Francisco Rodriguez-Valera
Frontiers in Microbiology, 2014
http://journal.frontiersin.org/article/10.3389/fmicb.2014.00027/abstract
Tales from a thousand and one phages
Francisco Rodriguez-Valera, Carolina Megumi Mizunoa & Rohit Ghaia
Bacteriophage, 2014
http://www.tandfonline.com/doi/abs/10.4161/bact.28265
Homologous recombination is involved in the diversity of replacement flexible genomic islands in aquatic prokaryotes
Mario López-Pérez, Ana-Belen Martin-Cuadrado and Francisco Rodriguez-Valera
Frontiers in Genetics, 2014
http://journal.frontiersin.org/article/10.3389/fgene.2014.00147/abstract
Diversity of cultured photosynthetic flagellates in the northeast Pacific and Arctic Oceans in summer
S. Balzano, P. Gourvil, R. Siano, M. Chanoine, D. Marie, S. Lessard, D. Sarno, and D. Vaulot
Biogeosciences, 2012
http://www.biogeosciences.net/9/4553/2012/bg-9-4553-2012.html
Parvilucifera rostrata sp. nov. (Perkinsozoa), a Novel Parasitoid that Infects Planktonic Dinoflagellates
Frédéric Lepelletiera, Sergey A. Karpov, Sophie Le Pansee, Estelle Bigeard, Alf Skovgaard, Christian Jeanthon, Laure Guillou
Protist, 2014
http://www.sciencedirect.com/science/article/pii/S1434461013000849
Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean
Dominique Boeuf, Matthew T. Cottrell, David L. Kirchman, Philippe Lebaron, Christian Jeanthon
FEMS Micriobiology Ecology, 2013
http://femsec.oxfordjournals.org/content/85/3/417
An improved protocol for flow cytometry analysis of phytoplankton cultures and natural samples
Dominique Marie, Fabienne Rigaut-Jalabert, and Daniel Vaulot
Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2014
http://dx.doi.org/10.1002/cyto.a.22517
Spatiotemporal changes in the genetic diversity of harmful algal blooms caused by the toxic dinoflagellate
A. Dia , L. Guillou , S. Mauger , E. Bigeard , D. Marie , M. Valero , C. Destombe
Molecular Ecology, 2014
http://dx.doi.org/10.1111/mec.12617
Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine
Florian Humily , Gregory K. Farrant , Dominique Marie , Frédéric Partensky , Sophie Mazard , Morgan Perennou , Karine Labadie , Jean-Marc Aury , Patrick Wincker , Audrey Nicolas Segui , David J. Scanlan , Laurence Garczarek
FEMS Micriobiology Ecology, 2014
http://dx.doi.org/10.1111/1574-6941.12285
A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus
Florian Humily , Frédéric Partensky , Christophe Six , Gregory K. Farrant , Morgane Ratin , Dominique Marie , Laurence Garczarek
PLoS One, 2013
http://dx.doi.org/10.1371/journal.pone.0084459
Dinomyces arenysensis gen. et sp. nov. (Rhizophydiales, Dinomycetaceae fam. nov.), a Chytrid Infecting Marine Dinoflagellates
Frédéric Lepelletier , Sergey A. Karpov , Elisabet Alacid , Sophie Le Panse , Estelle Bigeard , Esther Garcés , Christian Jeanthon , Laure Guillou
Protist, 2014
http://dx.doi.org/10.1016/j.protis.2014.02.004
Connecting thermal physiology and latitudinal niche partitioning in marine Synechococcus
Justine Pittera , Florian Humily , Maxine Thorel , Daphné Grulois , Laurence Garczarek , Christophe Six
ISME Journal, 2014
http://dx.doi.org/10.1038/ismej.2013.228
Brandtodinium gen. nov. and B. nutricula comb. Nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians
Ian Probert , Raffaele Siano , Camille Poirier , Johan Decelle , Tristan Biard , Akihiro Tuji , Noritoshi Suzuki , Fabrice Not
Journal of Phycology, 2014
http://dx.doi.org/10.1111/jpy.12174
Genomes of Alteromonas australica, a world apart
Mario López-Pérez , Aitor Gonzaga , Elena P Ivanova , Francisco Rodriguez-Valera,
BMC Genomics, 2014
http://dx.doi.org/10.1186/1471-2164-15-483
Marine Microorganisms as Source of Stereoselective Esterases and Ketoreductases: Kinetic Resolution of a Prostaglandin Intermediate
Valerio De Vitis , Benedetta Guidi , Martina Letizia Contente , Tiziana Granato , Paola Conti , Francesco Molinari , Elena Crotti , Francesca Mapelli , Sara Borin , Daniele Daffonchio , Diego Romano
Marine Biotechnology, 2014
http://dx.doi.org/10.1007/s10126-014-9602-z
Global and Phylogenetic Distribution of Quorum Sensing Signals, Acyl Homoserine Lactones, in the Family of Vibrionaceae
Bastian Rasmussen , Kristian Nielsen , Henrique Machado , Jette Melchiorsen , Lone Gram , Eva Sonnenschein
Marine Drugs, 2014
http://dx.doi.org/10.3390/md12115527
Dataset for metatranscriptome analysis of Prochlorococcus-rich marine picoplankton communities in the Gulf of Aqaba, Red Sea
Claudia Steglich , Damir Stazic , Steffen C. Lott , Karsten Voigt , Eyal Greengrass , Debbie Lindell , Wolfgang R. Hess
Marine Genomics, 2014
http://dx.doi.org/10.1016/j.margen.2014.10.009
Depth dependent metatranscriptomes of the marine pico-/nanoplanktonic communities in the Gulf of Aqaba/Eilat during seasonal deep mixing
Ulrike Pfreundt , Dan Miller , Lakshmi Adusumilli , Noga Stambler , Ilana Berman-Frank , Wolfgang R. Hess
Marine Genomics, 2014
http://dx.doi.org/10.1016/j.margen.2014.06.005
The primary transcriptome of the marine diazotroph Trichodesmium erythraeum IMS101
Ulrike Pfreundt , Matthias Kopf , Natalia Belkin , Ilana Berman-Frank , Wolfgang R. Hess
Scientific Reports, 2014
http://dx.doi.org/10.1038/srep06187
Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity
Karsten Voigt , Cynthia M Sharma , Jan Mitschke , S Joke Lambrecht , Bjoern Voss , Wolfgang R Hess , Claudia Steglich
ISME Journal, 2014
http://dx.doi.org/10.1038/ismej.2014.57
Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation
R. Paul , R. E. Jinkerson , K. Buss , J. Steel , R. Mohr , W. R. Hess , M. Chen , P. Fromme
Genome Announcement, 2014
http://dx.doi.org/10.1128/genomeA.01166-13
